Announcing CellProfiler 3.1.8

Happy holidays to everyone- we here at the CellProfiler team got you a little end-of-year treat in the form of CellProfiler 3.1.8.  This is primarily a bugfix release, getting rid of some bugs in MeasureObjectIntensity, MeasureColocalization, ExportToSpreadsheet, CorrectIlluminationCalculate, and Smooth.  We’ve also updated how we package for Windows, so those of you who had JAVA_HOME issues with 3.1.5 (feel free to now unset that in your environment variables if it’s set to your 3.1.5 install!) should now experience much smoother sailing.  As usual, you will find this new release (and links to all our old releases) on our releases page.

Thanks very much to Allen Goodman, Matthew Bowden, Vito Zanotelli, and Christian Clauss for their contributions on this release.

On behalf of the whole CellProfiler team, may the season treat you well, and we wish you a happy end of 2018 and beginning of 2019!

Making it easier to run image analysis in the cloud: announcing Distributed-CellProfiler

There’s nothing more exciting than getting back a big batch of data from your automated microscope – finally, you have the results of your screen, your timelapse, or whatever you’ve spent the last weeks or months preparing.  That excitement can turn to sadness quickly though when you realize that neither your laptop nor the old general-use computer in the lab are up to analyzing thousands (or tens of thousands, or hundreds of thousands!) of images.  But, congratulations! You’ve reached an elite level of CellProfiler users when you outgrow processing on a single local computer. Continue reading