Help Series

Help! Why do my output images seem all black?

Double clicking on the output images produced by CellProfiler sometimes opens up a screen in your operating system’s default image ...
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Help! Why does CellProfiler say it can’t find any valid image sets?

Defining the input to CellProfiler can be the hardest part of getting your pipeline set up and your analysis underway ...
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Help! What are these three different modules to identify objects?

It can be confusing when you’re trying to set up your first pipeline to figure out which modules to use ...
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