How-To

The CellProfiler 2 User’s Guide to CellProfiler 3.0, Part II: Converting your pipelines

For those of you who’ve been with us for a long time though, the obvious next question after how to ...
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The CellProfiler 2 User’s Guide to CellProfiler 3.0, Part I: Using the new Test Mode

Everyone here at the CellProfiler team is very excited about our new 3.0 release, and we certainly hope you are ...
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Mo Data, Mo Problems: How to share big data with ease

Sharing Image Data At the Imaging Platform we frequently need to send and receive images between collaborators or forum users ...
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A Quantitative Path to Pathology

This post was written by a guest author, Kun-Hsing Yu, who can be reached at Kun-Hsing_Yu@hms.harvard.edu.  Lung cancer causes more than ...
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Quantifying microscopy images: top 10 tips for image acquisition

Not every image you capture on your microscope is suited for quantification, no matter how nice they may look. Even ...
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It is plane to Z how FIJI is a great companion for visually verifying CellProfiler’s 3D segmentation

Now that CellProfiler can handle 3D images, how do you view the results? When processing 2D images, the IdentifyPrimaryObjects module ...
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CellProfiler & Ilastik: Superpowered Segmentation

Joining forces CellProfiler is capable of accurate and reliable segmentation of cells by utilizing a broad collection of classical image ...
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